Publications
Publications
2022
Grassmann G., Miotto M., Di Rienzo L., Gosti G., Ruocco G., Milanetti E.
A novel computational strategy for defining the minimal protein molecular surface representation
PLoS ONE, vol. 17, (no. 4 April)
2022
Di Rienzo L., De Flaviis L., Ruocco G., Folli V., Milanetti E.
Binding site identification of G protein-coupled receptors through a 3D Zernike polynomials-based method: application to C. elegans olfactory receptors
Journal of Computer-Aided Molecular Design, vol. 36, (no. 1), pp. 11-24
2022
Miotto M., Di Rienzo L., Gosti G., Bo' L., Parisi G., Piacentini R., Boffi A., Ruocco G., Milanetti E.
Inferring the stabilization effects of SARS-CoV-2 variants on the binding with ACE2 receptor
Communications Biology, vol. 5, (no. 1)
2022
Piacentini R., Centi L., Miotto M., Milanetti E., Di Rienzo L., Pitea M., Piazza P., Ruocco G., Boffi A., Parisi G.
Lactoferrin Inhibition of the Complex Formation between ACE2 Receptor and SARS CoV-2 Recognition Binding Domain
International Journal of Molecular Sciences, vol. 23, (no. 10)
2022
De Lauro A., Di Rienzo L., Miotto M., Olimpieri P.P., Milanetti E., Ruocco G.
Shape Complementarity Optimization of Antibody–Antigen Interfaces: The Application to SARS-CoV-2 Spike Protein
Frontiers in Molecular Biosciences, vol. 9
2022
Desantis F., Miotto M., Di Rienzo L., Milanetti E., Ruocco G.
Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity
Scientific Reports, vol. 12, (no. 1)
2022
Miotto M., Armaos A., Di Rienzo L., Ruocco G., Milanetti E., Tartaglia G.G.
Thermometer: A webserver to predict protein thermal stability
Bioinformatics, vol. 38, (no. 7), pp. 2060-2061
2021
Milanetti E., Miotto M., Di Rienzo L., Monti M., Gosti G., Ruocco G.
2D Zernike polynomial expansion: Finding the protein-protein binding regions
Computational and Structural Biotechnology Journal, vol. 19, pp. 29-36
2021
Grassmann G., Miotto M., Di Rienzo L., Salaris F., Silvestri B., Zacco E., Rosa A., Tartaglia G.G., Ruocco G., Milanetti E.
A computational approach to investigate tdp-43 rna-recognition motif 2 c-terminal fragments aggregation in amyotrophic lateral sclerosis
Biomolecules, vol. 11, (no. 12)
2021
Di Rienzo L., Miotto M., Bo L., Ruocco G., Raimondo D., Milanetti E.
Characterizing Hydropathy of Amino Acid Side Chain in a Protein Environment by Investigating the Structural Changes of Water Molecules Network
Frontiers in Molecular Biosciences, vol. 8
2021
Di Rienzo L., Monti M., Milanetti E., Miotto M., Boffi A., Tartaglia G.G., Ruocco G.
Computational optimization of angiotensin-converting enzyme 2 for SARS-CoV-2 Spike molecular recognition
Computational and Structural Biotechnology Journal, vol. 19, pp. 3006-3014
2021
Miotto M., Di Rienzo L., Gosti G., Milanetti E., Ruocco G.
Does blood type affect the COVID-19 infection pattern?
PLoS ONE, vol. 16, (no. 5 May)
2021
Calvo Galve N., Abrishamkar A., Sorrenti A., Di Rienzo L., Satta M., D'Abramo M., Coronado E., de Mello A.J., Minguez Espallargas G., Puigmarti-Luis J.
Exploiting Reaction-Diffusion Conditions to Trigger Pathway Complexity in the Growth of a MOF
Angewandte Chemie - International Edition, vol. 60, (no. 29), pp. 15920-15927
2021
Sandomenico A., Di Rienzo L., Calvanese L., Iaccarino E., D'auria G., Falcigno L., Chambery A., Russo R., Franzoso G., Tornatore L., D'abramo M., Ruvo M., Milanetti E., Raimondo D.
Insights into the interaction mechanism of dtp3 with mkk7 by using std-nmr and computational approaches
Biomedicines, vol. 9, (no. 1), pp. 1-16
2021
Milanetti E., Miotto M., Di Rienzo L., Nagaraj M., Monti M., Golbek T.W., Gosti G., Roeters S.J., Weidner T., Otzen D.E., Ruocco G.
In-Silico Evidence for a Two Receptor Based Strategy of SARS-CoV-2
Frontiers in Molecular Biosciences, vol. 8